Molecular Probes fluorescent organelle stains—Table 12.1

Green-Fluorescent ProbesYellow- and Orange-
Fluorescent Probes
Red-Fluorescent ProbesBlue-Fluorescent and
Other Detectable Probes
Cat #ProbeCat #ProbeCat #ProbeCat #Probe








Probes for Mitochondria: Section 12.2
A1372 Nonyl acridine orangeD2884-Di-1-ASP (DASPMI) M7512MitoTracker Red CMXRos * L6868Lucigenin †
D273 DiOC6(3) ‡D426DASPEIT3168JC-1 §

D378 DiOC7(3) ‡M7510MitoTracker Orange CMTMRos * D22421JC-9 §

M7514 MitoTracker Green FM * R634Rhodamine 6GM22425MitoTracker Red FM *

R302
R22420
Rhodamine 123 T639TetramethylrosamineM22426MitoTracker
Deep Red FM *


S7529 SYTO 18 yeast
mitochondrial stain
T668 Tetramethylrhodamine,
methyl ester (TMRM)




T3168 JC-1 § T669Tetramethylrhodamine,
ethyl ester (TMRE)




D22421 JC-9 §













Oxidation-Sensitive Probes for Mitochondria: Section 12.2
D632Dihydrorhodamine 123D633Dihydrorhodamine 6G M7513MitoTracker Red CM-H2XRos *



M7511MitoTracker Orange CM-H2TMRos * R14060RedoxSensor Red CC-1 **









Probes for Acidic Organelles Including Lysosomes: Section 12.3
L7526LysoTracker Green DND-26D113Dansyl cadaverineL7528LysoTracker Red DND-99D1552DAMP ††


L12491LysoTracker Yellow HCK-123R14060RedoxSensor Red CC-1 **H22845Hydroxystilbamidine






L7525LysoTracker Blue DND-22








pH-Sensitive Probes for Acidic Organelles: Section 12.3
L7534LysoSensor Green DND-153A1301Acridine orangeN3246Neutral redL7533LysoSensor Blue DND-167
L7535LysoSensor Green DND-189L7545LysoSensor Yellow/Blue DND-160 §

L7545LysoSensor Yellow/Blue DND-160 §


L22460LysoSensor Yellow/Blue 10,000 MW dextran §

L22460LysoSensor Yellow/Blue 10,000 MW dextran §








Probes for the Endoplasmic Reticulum: Section 12.4
E34250ER-Tracker GreenD282DiIC18(3)E34251ER-Tracker RedE12353ER-Tracker Blue-White DPX
D272DiOC5(3)D384DiIC16(3)



D273DiOC6(3)R648MPRhodamine B, hexyl ester











Probes for the Golgi Apparatus: Section 12.4
D3521
B22650
BODIPY FL C5-ceramide §

D3521
B22650
BODIPY FL C5-ceramide §

N1154
N22651
NBD C6-ceramide

D7540
B34400
BODIPY TR ceramide










* Aldehyde-fixable probe. † Chemiluminescent probe. ‡ Selective for mitochondria only at low applied concentrations (<100 nM). § Dual-emission spectrum. ** The differential distribution of the oxidized product between mitochondria and lysosomes appears to depend on the oxidation–reduction (redox) potential of the cytosol. †† Detect using anti-dinitrophenyl antibody (Anti-Dye and Anti-Hapten Antibodies—Section 7.4).